Product Citations: 23

GFI1-driven transcriptional and epigenetic programs maintain CD8+ T cell stemness and persistence.

In Nature Immunology on 15 May 2025 by Chaudhry, M. Z., Chen, E., et al.

Long-lived memory CD8+ T cells are essential for the control of persistent viral infections. The mechanisms that preserve memory cells are poorly understood. Fate mapping of the transcriptional repressor GFI1 identified that GFI1 was differentially regulated in virus-specific CD8+ T cells and was selectively expressed in stem cell memory and central memory cells. Deletion of GFI1 led to reduced proliferation and progressive loss of memory T cells, which in turn resulted in failure to maintain antigen-specific CD8+ T cell populations following infection with chronic lymphocytic choriomeningitis virus or murine cytomegalovirus. Ablation of GFI1 resulted in downregulation of the transcription factors EOMES and BCL-2 in memory CD8+ T cells. Ectopic expression of EOMES rescued the expression of BCL-2, but the persistence of memory CD8+ T cells was only partially rescued. These findings highlight the critical role of GFI1 in the long-term maintenance of memory CD8+ T cells in persistent infections by sustaining their proliferative potential.
© 2025. Crown.

  • Biochemistry and Molecular biology
  • Genetics
  • Immunology and Microbiology

Double-stranded RNA responses, neoantigen presentation and suppression of hepatocellular carcinoma through NMD inhibition via endonuclease SMG6

Preprint on BioRxiv : the Preprint Server for Biology on 15 January 2025 by Arpa, E. S., Ricci, V., et al.

SUMMARY Nonsense-mediated mRNA decay (NMD) eliminates transcripts with premature termination codons, often resulting from mutations or RNA processing errors. While both pro-and anti-tumor NMD activities have been proposed, mechanistic and therapeutic insights into NMD inhibition in cancer have been hindered by the lack of a suitable in vivo model. We address this by combining a liver-specific, conditional Smg6 mutation – disabling the endonuclease that cleaves NMD-regulated transcripts – with a genetic hepatocellular carcinoma (HCC) model. SMG6 inhibition elevates NMD-sensitive mRNA abundance and translation, promotes MHC presentation of unique immunopeptides, and enhances T-cell infiltration. Additionally, mutant SMG6 specifically activates type-I interferon signaling via double-stranded RNA (dsRNA) accumulation and dsRNA-sensor MDA5, boosting innate immune responses. These pathways converge to halt HCC at an inflammatory stage. Our findings establish SMG6 as a key regulator of dsRNA homeostasis and immune activation, offering therapeutic potential and advancing our understanding of NMD in immune regulation.

  • Mus musculus (House mouse)
  • Cancer Research
  • Genetics

Current pharmacotherapy remains futile in acute alveolar inflammation induced by Gram-negative bacteria (GNB), eliciting consequent respiratory failure. The release of lipid polysaccharides after antibiotic treatment and subsequent progress of proinflammatory cascade highlights the necessity to apply effective inflammation management simultaneously. This work describes modular self-assembling peptides for rapid anti-inflammatory programming (SPRAY) to form nanoparticles targeting macrophage specifically, having anti-inflammation and bactericidal functions synchronously. SPRAY nanoparticles accelerate the self-delivery process in macrophages via lysosomal membrane permeabilization, maintaining anti-inflammatory programming in macrophages with efficacy close to T helper 2 cytokines. By pulmonary deposition, SPRAY nanoparticles effectively suppress inflammatory infiltration and promote alveoli regeneration in murine aseptic acute lung injury. Moreover, SPRAY nanoparticles efficiently eradicate multidrug-resistant GNB in alveoli by disrupting bacterial membrane. The universal molecular design of SPRAY nanoparticles provides a robust and clinically unseen local strategy in reverse acute inflammation featured by a high accumulation of proinflammatory cellularity and drug-resistant bacteria.

  • Mus musculus (House mouse)
  • Immunology and Microbiology

CD94+ natural killer cells potentiate pulmonary ischaemia-reperfusion injury.

In The European Respiratory Journal on 1 September 2024 by Tsao, T., Qiu, L., et al.

Pulmonary ischaemia-reperfusion injury (IRI) is a major contributor to poor lung transplant outcomes. We recently demonstrated a central role of airway-centred natural killer (NK) cells in mediating IRI; however, there are no existing effective therapies for directly targeting NK cells in humans.
We hypothesised that a depleting anti-CD94 monoclonal antibody (mAb) would provide therapeutic benefit in mouse and human models of IRI based on high levels of KLRD1 (CD94) transcripts in bronchoalveolar lavage samples from lung transplant patients.
We found that CD94 is highly expressed on mouse and human NK cells, with increased expression during IRI. Anti-mouse and anti-human mAbs against CD94 showed effective NK cell depletion in mouse and human models and blunted lung damage and airway epithelial killing, respectively. In two different allogeneic orthotopic lung transplant mouse models, anti-CD94 treatment during induction reduced early lung injury and chronic inflammation relative to control therapies. Anti-CD94 did not increase donor antigen-presenting cells that could alter long-term graft acceptance.
Lung transplant induction regimens incorporating anti-CD94 treatment may safely improve early clinical outcomes.
Copyright ©The authors 2024. For reproduction rights and permissions contact permissions@ersnet.org.

  • Cardiovascular biology

Aberrant mitochondrial DNA synthesis in macrophages exacerbates inflammation and atherosclerosis.

In Nature Communications on 26 August 2024 by Natarajan, N., Florentin, J., et al.

There is a large body of evidence that cellular metabolism governs inflammation, and that inflammation contributes to the progression of atherosclerosis. However, whether mitochondrial DNA synthesis affects macrophage function and atherosclerosis pathology is not fully understood. Here we show, by transcriptomic analyzes of plaque macrophages, spatial single cell transcriptomics of atherosclerotic plaques, and functional experiments, that mitochondrial DNA (mtDNA) synthesis in atherosclerotic plaque macrophages are triggered by vascular cell adhesion molecule 1 (VCAM-1) under inflammatory conditions in both humans and mice. Mechanistically, VCAM-1 activates C/EBPα, which binds to the promoters of key mitochondrial biogenesis genes - Cmpk2 and Pgc1a. Increased CMPK2 and PGC-1α expression triggers mtDNA synthesis, which activates STING-mediated inflammation. Consistently, atherosclerosis and inflammation are less severe in Apoe-/- mice lacking Vcam1 in macrophages. Downregulation of macrophage-specific VCAM-1 in vivo leads to decreased expression of LYZ1 and FCOR, involved in STING signalling. Finally, VCAM-1 expression in human carotid plaque macrophages correlates with necrotic core area, mitochondrial volume, and oxidative damage to DNA. Collectively, our study highlights the importance of macrophage VCAM-1 in inflammation and atherogenesis pathology and proposes a self-acerbating pathway involving increased mtDNA synthesis.
© 2024. The Author(s).

  • Mus musculus (House mouse)
  • Cell Biology
  • Genetics
  • Immunology and Microbiology
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