Dead cell processing alters the Clec9A regulatory pathway.(A, B) Association of Clec9A with dead cells taken up by DC. MutuDC 1940 were cultured with PKH26 labeled CHO-K1 dead cells for 2–5 hr, then fixed and stained for Clec9A. (A) Images show Clec9A expression (green), dead cells (red), DAPI (b...
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Dead cell processing alters the Clec9A regulatory pathway.(A, B) Association of Clec9A with dead cells taken up by DC. MutuDC 1940 were cultured with PKH26 labeled CHO-K1 dead cells for 2–5 hr, then fixed and stained for Clec9A. (A) Images show Clec9A expression (green), dead cells (red), DAPI (blue) at 4 hr. Colocalization images, generated using Image J, show pixels that have a positive signal in both Clec9A and dead cell channels in white, whereas single positive and negative pixels are shown in black. Images are representative of four independent experiments (101 cells). Scale bars represent 10 μm. (B) Colocalization of dead cells with Clec9A was assessed by Manders’ coefficient to determine the percentage of internalized dead cell material that overlapped with Clec9A. Analysis was performed using one-way ANOVA with Tukey’s multiple comparisons. Cumulative data from four independent experiments (2 hr: 91 cells, 3 hr: 74 cells, 4 hr: 101 cells, 5 hr: 85 cells). Bars represent mean ± SD. ****p<0.0001. (C) Clec9A-RNF41 interaction is reduced at early stages following dead cell uptake in primary cDC1. Spleen cDC1 were enriched from wild-type (WT) or Clec9a-/− mice (Clec9A KO), then cultured in the presence (+) or absence (-) of dead CHO-K1 cells for 4 hr. A PLA was performed for Clec9A and RNF41. Representative images from two independent experiments. PLA signal is in green, DAPI (nucleus) in blue. Scale bars represent 10 μm. (WT DC no dead cells: 53 cells; WT DC + dead cells: 56 cells; Clec9A KO DC no dead cells: 44 cells; Clec9A KO DC + dead cells: 23 cells). The total area of Clec9A + RNF41 PLA per cell (Arbitrary Units, A.U.) was analyzed by Mann–Whitney test. Cumulative data from two independent experiments. Bars represent mean ± SD. ****p<0.0001. (D) Clec9A levels and RNF41 levels are not reduced in the presence of dead cells. MutuDC 1940 were cultured with PKH26-labeled CHO-K1 dead cells for 4 hr, fixed and stained for either Clec9A (Top panel; No dead cells: 67 cells; Dead cells: 68 cells) or RNF41 (Bottom panel; No dead cells: 32 cells; Dead cells: 39 cells). The total area of Clec9A or RNF41 staining per cell (A.U.), was analyzed by Mann–Whitney test. Cumulative data from two independent experiments for Clec9A expression, one experiment for RNF41 expression. Bars represent mean ± SD. ****p<0.0001. (E) Clec9A and RNF41 interaction in DC is reduced at early stages following dead cell uptake. MutuDC 1940 were cultured with unlabeled dead CHO-K1 cells for 4 or 18 hr and a PLA performed for Clec9A and RNF41, with PLA signal indicated in green. Representative images from two independent experiments are shown for 4 hr and 18 hr. Scale bars represent 10 μm. The total area of PLA per cell (A.U.) was analyzed by Kruskal-Wallis test with Dunn’s multiple comparisons. Cumulative data from two independent experiments. (4 h-dead cells: 54 cells; 4 h+dead cells: 57 cells; 18 h-dead cells: 89 cells; 18 h+dead cells: 90 cells). Bars represent mean ± SD. ****p<0.0001. (F) Clec9A-Ubiquitination in DC, visualized by PLA, following dead cell uptake. MutuDC 1940 were cultured +/− CHO-K1 dead cells for 4 or 18 hr, and a PLA performed for Clec9A and Ubiquitin, with Clec9A-Ub PLA signal indicated in green, DAPI in blue. 4 hr images are from one experiment (4 h-dead cells: 47 cells; 4 h+dead cells: 39 cells), 18 hr images are representative of two independent experiments (18 h-dead cells: 82 cells; 18 h+dead cells: 73 cells). Scale bars represent 10 μm. The total area of PLA per cell (A.U.) was analyzed by Kruskal-Wallis test with Dunn’s multiple comparisons (4 h-dead cells: 47 cells; 4 h+dead cells: 39 cells; 18h-dead cells: 39 cells; 18h+dead cells: 34 cells). Bars represent mean ± SD. **p<0.01, ***p<0.001, ****p<0.0001. (G, H) Clec9A ubiquitination Clec9A in DC is reduced at early stages following dead cell uptake. MutuDC 1940 were cultured +/− CHO-K1 dead cells for (G) 2 hr or (H) 14 hr, and cellular fractionation performed. Ubiquitinated proteins were IP using TUBE beads and ubiquitinated Clec9A detected by WB using anti-Clec9A Ab. Cellular fractions (Input) were analyzed by WB. Representative of three independent experiments for 2 hr, and two experiments for14h culture. (I) Clec9A and RNF41 interaction does not appear to colocalize with dead cell uptake in DC. MutuDC 1940 were cultured with PKH26 labeled dead CHO-K1 cells (red) for 3, 4 and 5 hr, and a PLA performed for Clec9A and RNF41, with PLA signal indicated in green. Representative images from two independent experiments for 4 hr, and 1 experiment at 3 and 5 hr. (I: 3 hr: 32 cells, 4 hr: 84 cells, 5 hr: 42 cells). Scale bars represent 10 μm. (J) Clec9A and Erlin2 interaction in DC in the absence and presence of dead cells +/− MG132. MutuDC 1940 cells were cultured for 4 hr +/− PKH26 labeled CHO-K1 dead cells, and the proteasomal inhibitor MG132 (5 μM) or the control DMSO. A PLA was performed for Clec9A and Erlin2 (No dead cells; DMSO: 44 cells, MG132: 39 cells. Dead cells; DMSO: 38 cells, MG132: 42 cells). The total area of PLA per cell (A.U.) was analyzed by Kruskal-Wallis test with Dunn’s multiple comparisons. Bars represent mean ± SD. ****p<0.0001.
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